在这里附一部分数据(字数所限,仅附20行,测试用有10000行),免得后来者看的一头雾水。
Chr1 1441 Chr1__1441 TA TAA,T 2048.89 PASS AC=14,10;AF=0.093,0.067;AN=150;BaseQRankSum=0.731;ClippingRankSum=0.731;DP=711;ExcessHet=13.7436;FS=0.000;InbreedingCoeff=-0.1815;MLEAC=14,10;MLEAF=0.093,0.067;MQ=50.00;MQRankSum=-5.730e-01;QD=10.40;ReadPosRankSum=0.747;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.687;ANN=T|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.1442delA||||||,TAA|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.1442_1443insA|||||| GT:AD:DP:GQ:PGT:PID:PL 0/1:7,1,0:8:21:0|1:1441_T_TA:21,0,320,42,323,365 0/1:8,1,0:9:18:0|1:1441_T_TA:18,0,354,42,357,399 0/0:19,0,0:19:48:.:.:0,48,720,48,720,720 0/0:15,1,0:16:3:0|1:1441_T_TA:0,3,610,45,613,655 0/0:15,0,0:15:33:.:.:0,33,495,33,495,495 0/2:5,0,6:11:99:.:.:129,144,281,0,137,120 0/0:16,0,0:16:33:.:.:0,33,495,33,495,495 0/2:11,5,8:24:84:.:.:154,84,418,0,166,317 0/2:13,0,3:16:44:.:.:44,83,507,0,424,415 0/0:16,0,0:16:27:.:.:0,27,405,27,405,405 0/0:8,0,0:8:18:.:.:0,18,270,18,270,270 0/0:5,0,0:5:15:.:.:0,15,197,15,197,197 0/1:3,2,0:5:75:0|1:1441_T_TA:75,0,105,84,111,195 0/0:12,0,0:12:21:.:.:0,21,315,21,315,315 0/0:12,0,0:12:18:.:.:0,18,270,18,270,270 0/1:3,5,0:8:66:.:.:121,0,66,130,81,211 0/0:8,0,0:8:15:.:.:0,15,225,15,225,225 ./.:0,0,0:0:.:.:.:. ./.:0,0,0:0:.:.:.:. 0/0:4,0,0:4:6:.:.:0,6,90,6,90,90 0/0:8,0,0:8:12:.:.:0,12,180,12,180,180 0/0:6,0,0:6:12:.:.:0,12,180,12,180,180 ./.:0,0,0:2:.:0|1:1431_A_G:. 0/2:13,0,4:17:71:.:.:71,110,467,0,357,345 0/0:4,0,0:4:6:.:.:0,6,90,6,90,90 0/2:6,0,3:9:65:.:.:65,83,248,0,165,156 0/0:7,0,0:8:21:0|1:1431_A_G:0,21,302,21,302,302 0/0:14,0,0:14:21:.:.:0,21,315,21,315,315 0/0:6,0,0:6:15:.:.:0,15,225,15,225,225 0/1:4,1,0:5:14:.:.:14,0,105,26,108,134
Chr1 1659 Chr1__1659 GA GAA,G 4210.01 PASS AC=7,37;AF=0.073,0.385;AN=96;BaseQRankSum=0.727;ClippingRankSum=-7.200e-02;DP=403;ExcessHet=9.0070;FS=2.459;InbreedingCoeff=0.0295;MLEAC=5,38;MLEAF=0.052,0.396;MQ=48.40;MQRankSum=0.103;QD=17.76;ReadPosRankSum=0.101;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.510;ANN=G|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.1660delA||||||,GAA|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.1660_1661insA|||||| GT:AD:DP:GQ:PL 1/2:2,6,2:10:5:133,5,46,108,0,193 0/1:5,1,0:6:9:9,0,92,23,95,118 0/2:2,0,4:6:35:88,94,141,0,47,35 0/0:10,0,0:10:15:0,15,225,15,225,225 0/2:2,0,3:5:38:64,70,117,0,47,38 2/2:0,0,6:6:18:159,159,159,18,18,0 2/2:0,0,4:4:12:106,106,106,12,12,0 0/2:3,0,15:18:25:327,336,406,0,70,25 2/2:0,0,9:9:27:239,239,239,27,27,0 0/2:9,0,3:12:27:27,54,265,0,211,203 0/2:2,0,5:7:32:95,101,148,0,46,32 ./.:0,0,0:1:.:. 0/0:4,0,0:4:0:0,0,84,0,84,84 0/2:5,0,5:10:99:102,117,290,0,173,158 0/2:3,2,5:10:19:103,79,179,0,19,70 0/0:6,0,0:6:0:0,0,26,0,26,26 0/2:2,0,4:6:19:88,94,125,0,31,19 2/2:0,0,3:3:9:63,63,63,9,9,0 ./.:0,0,0:0:.:. ./.:0,0,0:0:.:. ./.:0,0,0:2:.:. ./.:0,0,0:0:.:. ./.:0,0,0:0:.:. 0/2:1,0,3:4:14:68,71,94,0,23,14 2/2:0,0,4:4:12:106,106,106,12,12,0 2/2:0,0,6:6:18:159,159,159,18,18,0 ./.:5,0,0:5:.:. ./.:1,0,0:1:.:. 0/2:3,0,7:10:86:155,164,272,0,107,86 ./.:1,0,0:1:.:.
Chr1 1704 Chr1__1704 T TGG 5545.22 PASS AC=53;AF=0.552;AN=96;BaseQRankSum=-2.630e-01;ClippingRankSum=0.988;DP=376;ExcessHet=0.0003;FS=0.000;InbreedingCoeff=0.3698;MLEAC=57;MLEAF=0.594;MQ=48.68;MQRankSum=-1.920e+00;QD=30.98;ReadPosRankSum=0.296;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.716;ANN=TGG|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.1704_1705insGG|||||| GT:AD:DP:GQ:PGT:PID:PL 0/1:4,7:11:99:.:.:282,0,147 0/1:5,3:8:80:.:.:80,0,201 1/1:0,5:5:15:.:.:225,15,0 0/1:5,2:7:69:0|1:1704_T_TGG:69,0,204 1/1:0,6:6:18:.:.:270,18,0 0/0:8,0:8:9:.:.:0,9,135 1/1:0,4:4:12:.:.:180,12,0 0/0:19,0:19:21:.:.:0,21,315 0/0:19,0:19:18:.:.:0,18,270 1/1:0,8:8:24:.:.:350,24,0 0/0:7,0:7:6:.:.:0,6,90 ./.:0,0:0:.:.:.:. 0/0:2,0:2:3:.:.:0,3,45 1/1:0,6:6:18:.:.:266,18,0 0/0:10,0:10:15:.:.:0,15,225 ./.:3,0:3:.:.:.:. 1/1:0,5:5:15:.:.:212,15,0 0/0:6,0:6:2:.:.:0,2,133 ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. 0/0:9,0:9:0:.:.:0,0,113 0/0:5,0:5:9:.:.:0,9,135 0/0:5,0:5:15:.:.:0,15,225 ./.:2,0:2:.:.:.:. ./.:1,0:1:.:.:.:. 0/1:10,1:11:12:.:.:12,0,402 ./.:1,0:1:.:.:.:.
Chr1 1745 Chr1__1745 CA C,CAA 8169.11 PASS AC=75,8;AF=0.815,0.087;AN=92;BaseQRankSum=-2.240e-01;ClippingRankSum=0.727;DP=323;ExcessHet=0.0336;FS=0.000;InbreedingCoeff=0.3762;MLEAC=77,5;MLEAF=0.837,0.054;MQ=56.10;MQRankSum=0.224;QD=30.60;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.947;ANN=C|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.1746delA||||||,CAA|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.1746_1747insA|||||| GT:AD:DP:GQ:PGT:PID:PL 1/1:0,10,0:10:30:.:.:304,30,0,304,30,304 1/1:0,9,0:9:27:.:.:324,27,0,324,27,324 1/1:0,3,0:3:9:.:.:86,9,0,86,9,86 1/1:0,3,0:3:9:.:.:86,9,0,86,9,86 1/2:0,1,4:5:24:.:.:194,168,165,28,0,24 1/1:0,6,0:6:18:.:.:172,18,0,172,18,172 2/2:0,0,3:3:9:1|1:1745_C_CA:103,103,103,9,9,0 1/1:0,14,0:14:42:.:.:409,42,0,409,42,409 0/1:2,15,0:17:6:.:.:381,0,6,387,52,439 1/1:0,2,0:2:6:.:.:58,6,0,58,6,58 1/1:0,6,0:6:18:.:.:167,18,0,167,18,167 ./.:0,0,0:0:.:.:.:. 1/1:0,2,0:2:6:.:.:58,6,0,58,6,58 2/2:0,0,3:3:9:1|1:1745_C_CA:135,135,135,9,9,0 1/1:0,14,0:14:42:.:.:392,42,0,392,42,392 ./.:0,0,0:0:.:.:.:. 2/2:0,0,2:2:6:1|1:1745_C_CA:90,90,90,6,6,0 1/1:0,5,0:5:15:.:.:144,15,0,144,15,144 ./.:0,0,0:0:.:.:.:. ./.:0,0,0:0:.:.:.:. ./.:0,0,0:0:.:.:.:. ./.:0,0,0:0:.:.:.:. ./.:0,0,0:0:.:.:.:. 1/1:0,9,0:9:27:.:.:259,27,0,259,27,259 1/1:0,4,0:4:12:.:.:115,12,0,115,12,115 1/1:0,2,0:2:6:.:.:58,6,0,58,6,58 ./.:0,0,0:0:.:.:.:. ./.:0,0,0:0:.:.:.:. 1/1:0,8,0:8:24:.:.:230,24,0,230,24,230 ./.:0,0,0:0:.:.:.:.
Chr1 1822 Chr1__1822 A AT 906.71 PASS AC=12;AF=0.133;AN=90;BaseQRankSum=0.546;ClippingRankSum=-7.270e-01;DP=352;ExcessHet=0.0050;FS=0.000;InbreedingCoeff=0.3570;MLEAC=12;MLEAF=0.133;MQ=56.09;MQRankSum=0.194;QD=16.19;ReadPosRankSum=0.720;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.598;ANN=AT|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.1822_1823insT|||||| GT:AD:DP:GQ:PL 0/0:15,0:15:30:0,30,450 0/0:11,0:11:15:0,15,225 0/0:8,0:8:21:0,21,315 0/0:4,0:4:9:0,9,135 1/1:0,4:4:12:122,12,0 0/0:6,0:6:15:0,15,225 1/1:0,2:2:6:61,6,0 0/0:13,0:13:27:0,27,405 0/0:19,0:19:39:0,39,585 0/0:3,0:3:9:0,9,113 0/0:8,0:8:18:0,18,270 ./.:0,0:0:.:. 0/0:3,0:3:9:0,9,125 1/1:0,7:7:21:214,21,0 0/0:17,0:17:30:0,30,450 0/0:2,0:2:6:0,6,72 0/1:1,3:4:33:80,0,33 0/0:2,0:2:3:0,3,45 ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. 0/0:10,0:10:21:0,21,315 0/0:2,0:2:6:0,6,84 ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. 0/0:10,0:10:15:0,15,225 ./.:0,0:0:.:.
Chr1 1882 Chr1__1882 C CT 908.32 PASS AC=7;AF=0.083;AN=84;BaseQRankSum=0.727;ClippingRankSum=0.720;DP=361;ExcessHet=0.0336;FS=0.000;InbreedingCoeff=0.2428;MLEAC=6;MLEAF=0.071;MQ=48.62;MQRankSum=-6.940e-01;QD=25.23;ReadPosRankSum=-7.700e-02;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.631;ANN=CT|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.1882_1883insT|||||| GT:AD:DP:GQ:PGT:PID:PL 0/0:19,0:19:39:.:.:0,39,585 0/0:6,0:6:12:.:.:0,12,180 0/0:11,0:11:33:.:.:0,33,379 0/0:7,0:7:15:.:.:0,15,225 0/1:2,4:6:72:0|1:1869_A_G:162,0,72 0/0:7,0:7:12:.:.:0,12,180 1/1:0,1:1:3:1|1:1869_A_G:45,3,0 0/0:14,0:14:30:.:.:0,30,450 0/0:15,0:15:18:.:.:0,18,270 0/0:3,0:3:6:.:.:0,6,90 0/0:7,0:7:9:.:.:0,9,135 ./.:0,0:0:.:.:.:. 0/0:3,0:3:9:.:.:0,9,113 1/1:0,13:13:39:1|1:1869_A_G:542,39,0 0/0:14,0:14:21:.:.:0,21,315 0/0:2,0:2:6:.:.:0,6,72 0/1:1,3:4:33:0|1:1869_A_G:123,0,33 0/0:1,0:1:3:.:.:0,3,30 ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. 0/0:7,0:7:21:.:.:0,21,280 0/0:3,0:3:6:.:.:0,6,90 0/0:2,0:2:6:.:.:0,6,72 ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. 0/0:7,0:7:15:.:.:0,15,225 ./.:0,0:0:.:.:.:.
Chr1 1898 Chr1__1898 AT A 1484.93 PASS AC=11;AF=0.120;AN=92;BaseQRankSum=0.727;ClippingRankSum=-3.610e-01;DP=361;ExcessHet=2.3098;FS=6.740;InbreedingCoeff=-0.0445;MLEAC=12;MLEAF=0.130;MQ=57.73;MQRankSum=0.00;QD=17.89;ReadPosRankSum=0.198;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.802;ANN=A|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.1899delT|||||| GT:AD:DP:GQ:PGT:PID:PL 0/0:19,0:19:39:.:.:0,39,585 0/0:8,0:8:0:.:.:0,0,197 0/0:11,0:11:27:.:.:0,27,405 0/0:6,0:6:15:.:.:0,15,225 0/0:4,0:6:12:.:.:0,12,180 0/0:4,0:4:9:.:.:0,9,135 ./.:0,0:0:.:.:.:. 0/0:15,0:15:24:.:.:0,24,360 0/0:10,0:10:15:.:.:0,15,225 0/0:3,0:3:6:.:.:0,6,90 0/0:9,0:9:15:.:.:0,15,225 ./.:0,0:0:.:.:.:. 0/0:3,0:3:9:.:.:0,9,113 0/0:10,0:10:21:.:.:0,21,315 0/0:11,0:11:24:.:.:0,24,360 0/0:3,0:3:9:.:.:0,9,91 0/1:3,1:4:33:0|1:1792_A_G:33,0,123 0/0:1,0:1:3:.:.:0,3,30 ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. 0/0:8,0:8:18:.:.:0,18,270 0/0:4,0:4:9:.:.:0,9,135 0/0:2,0:2:6:.:.:0,6,72 ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. 0/0:8,0:8:18:.:.:0,18,270 ./.:0,0:0:.:.:.:.
Chr1 2621 Chr1__2621 G GA 1473.12 PASS AC=8;AF=0.070;AN=114;BaseQRankSum=0.248;ClippingRankSum=-6.270e-01;DP=435;ExcessHet=4.1749;FS=0.000;InbreedingCoeff=-0.1615;MLEAC=10;MLEAF=0.088;MQ=47.45;MQRankSum=0.00;QD=15.84;ReadPosRankSum=0.573;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.659;ANN=GA|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.2621_2622insA|||||| GT:AD:DP:GQ:PGT:PID:PL 0/0:4,0:4:6:.:.:0,6,90 0/0:9,0:9:15:.:.:0,15,225 0/1:1,7:8:21:0|1:2621_G_GA:278,0,21 0/1:13,3:16:49:.:.:49,0,413 0/1:3,6:9:99:0|1:2621_G_GA:231,0,108 0/0:2,0:2:6:.:.:0,6,84 ./.:0,0:0:.:.:.:. 0/0:30,0:30:60:.:.:0,60,900 0/0:16,0:16:30:.:.:0,30,450 0/1:6,8:14:99:0|1:2621_G_GA:293,0,228 0/0:6,0:6:12:.:.:0,12,180 ./.:0,0:0:.:.:.:. 0/0:6,0:6:12:.:.:0,12,180 0/0:2,0:2:6:.:.:0,6,72 0/0:16,0:16:30:.:.:0,30,450 0/1:6,6:12:99:.:.:159,0,234 0/0:1,0:1:3:.:.:0,3,42 0/0:6,0:6:6:.:.:0,6,90 ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. 0/0:2,0:2:6:.:.:0,6,84 0/0:8,0:8:9:.:.:0,9,135 0/0:3,0:3:3:.:.:0,3,45 0/0:3,0:3:3:.:.:0,3,45 0/0:5,0:5:9:.:.:0,9,135 0/0:3,0:3:3:.:.:0,3,45 0/0:4,0:4:3:.:.:0,3,45 0/0:2,0:2:3:.:.:0,3,45 0/0:12,0:12:24:.:.:0,24,360 ./.:0,0:0:.:.:.:.
Chr1 2758 Chr1__2758 C CT 482.86 PASS AC=7;AF=0.052;AN=134;BaseQRankSum=0.671;ClippingRankSum=-5.600e-02;DP=600;ExcessHet=4.5325;FS=9.248;InbreedingCoeff=-0.1089;MLEAC=8;MLEAF=0.060;MQ=42.08;MQRankSum=-1.067e+00;QD=5.31;ReadPosRankSum=0.322;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=1.818;ANN=CT|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.2758_2759insT|||||| GT:AD:DP:GQ:PGT:PID:PL 0/0:15,0:15:39:.:.:0,39,585 0/0:16,0:16:0:.:.:0,0,314 0/0:10,0:10:24:.:.:0,24,360 0/0:17,0:17:36:.:.:0,36,540 0/0:4,0:4:12:.:.:0,12,167 0/0:9,0:9:24:.:.:0,24,360 0/0:1,0:1:3:.:.:0,3,30 0/1:16,3:19:75:0|1:2758_C_CT:75,0,663 0/0:17,0:17:9:.:.:0,9,588 0/0:16,0:16:36:.:.:0,36,540 0/0:7,0:7:18:.:.:0,18,270 0/0:4,0:4:12:.:.:0,12,133 0/1:6,2:8:66:0|1:2758_C_CT:66,0,311 0/0:7,0:7:15:.:.:0,15,225 0/0:16,0:16:30:.:.:0,30,450 0/0:12,0:12:15:.:.:0,15,225 0/0:5,0:5:0:.:.:0,0,42 0/0:5,0:5:15:.:.:0,15,129 ./.:0,0:0:.:.:.:. 0/0:4,0:4:12:.:.:0,12,155 ./.:2,0:2:.:.:.:. 0/0:3,0:3:9:.:.:0,9,125 0/0:8,0:8:24:.:.:0,24,206 0/0:6,0:6:9:.:.:0,9,135 0/0:1,0:1:3:.:.:0,3,42 0/0:5,0:5:15:.:.:0,15,175 0/0:2,0:2:6:.:.:0,6,72 0/0:7,0:7:21:.:.:0,21,178 0/0:6,0:6:18:.:.:0,18,205 0/0:1,0:1:3:.:.:0,3,30
Chr1 3545 Chr1__3545 T TTAGA 1502.6 PASS AC=12;AF=0.078;AN=154;BaseQRankSum=0.731;ClippingRankSum=-2.890e-01;DP=1168;ExcessHet=0.0025;FS=1.648;InbreedingCoeff=0.4177;MLEAC=9;MLEAF=0.058;MQ=49.22;MQRankSum=-7.310e-01;QD=25.47;ReadPosRankSum=0.731;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.535;ANN=TTAGA|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.3545_3546insTAGA|||||| GT:AD:DP:GQ:PGT:PID:PL 0/0:20,0:20:42:.:.:0,42,630 0/0:30,0:30:60:.:.:0,60,900 0/0:17,0:17:30:.:.:0,30,450 0/0:27,0:27:51:.:.:0,51,765 0/0:13,0:13:24:.:.:0,24,360 0/0:11,0:11:30:.:.:0,30,450 0/0:13,0:13:21:.:.:0,21,315 0/0:25,0:25:48:.:.:0,48,720 0/0:29,0:29:57:.:.:0,57,855 0/0:25,0:25:45:.:.:0,45,675 0/0:17,0:17:36:.:.:0,36,540 0/0:11,0:11:33:0|1:3538_C_T:0,33,495 0/0:15,0:15:27:.:.:0,27,405 0/0:19,0:19:39:.:.:0,39,585 0/0:12,0:12:27:.:.:0,27,405 0/0:23,0:23:33:.:.:0,33,495 0/0:12,0:12:24:.:.:0,24,360 0/0:14,0:14:15:.:.:0,15,225 ./.:0,0:0:.:.:.:. 0/0:17,0:17:27:.:.:0,27,405 0/0:13,0:13:21:.:.:0,21,315 0/0:12,0:12:30:.:.:0,30,450 1/1:0,3:3:9:1|1:3545_T_TTAGA:135,9,0 0/0:16,0:16:39:.:.:0,39,585 0/0:11,0:11:18:.:.:0,18,270 ./.:5,0:5:.:.:.:. 0/1:4,8:12:99:0|1:3545_T_TTAGA:366,0,141 0/0:8,0:8:9:.:.:0,9,135 0/1:2,4:6:72:.:.:162,0,72 0/0:8,0:9:24:0|1:3545_T_G:0,24,360
Chr1 3873 Chr1__3873 A AT 305.88 PASS AC=4;AF=0.032;AN=126;BaseQRankSum=0.720;ClippingRankSum=0.925;DP=532;ExcessHet=5.3536;FS=7.395;InbreedingCoeff=-0.1491;MLEAC=4;MLEAF=0.032;MQ=53.51;MQRankSum=-7.200e-01;QD=7.46;ReadPosRankSum=0.736;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=1.749;ANN=AT|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.3873_3874insT|||||| GT:AD:DP:GQ:PGT:PID:PL 0/0:13,0:13:24:.:.:0,24,360 0/0:5,0:6:15:0|1:3792_G_A:0,15,225 0/0:11,0:11:27:.:.:0,27,405 0/0:16,0:16:30:.:.:0,30,450 0/0:12,0:12:21:.:.:0,21,315 0/0:4,0:4:0:.:.:0,0,72 0/0:9,0:9:21:.:.:0,21,315 0/0:15,0:15:45:0|1:3873_A_AT:0,45,655 0/1:9,3:12:99:0|1:3873_A_AT:99,0,394 0/0:20,0:20:18:.:.:0,18,569 0/0:11,0:11:9:.:.:0,9,135 0/0:3,0:3:6:.:.:0,6,90 0/0:9,0:9:0:.:.:0,0,209 0/0:10,0:10:0:.:.:0,0,322 0/0:15,0:15:18:.:.:0,18,270 0/1:4,2:6:72:.:.:72,0,162 0/0:1,0:1:3:.:.:0,3,30 0/0:5,0:5:12:.:.:0,12,180 ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. ./.:0,0:0:.:.:.:. 0/0:1,0:1:3:.:.:0,3,25 0/0:11,0:11:0:.:.:0,0,321 0/0:6,0:6:15:.:.:0,15,225 0/0:3,0:3:3:.:.:0,3,45 0/0:5,0:5:6:.:.:0,6,90 ./.:0,0:0:.:.:.:. 0/0:4,0:4:3:.:.:0,3,45 0/0:2,0:2:6:.:.:0,6,72
Chr1 4100 Chr1__4100 TAA TA,T 5421.72 PASS AC=39,11;AF=0.415,0.117;AN=94;BaseQRankSum=0.404;ClippingRankSum=-7.100e-02;DP=378;ExcessHet=0.0189;FS=3.177;InbreedingCoeff=0.3683;MLEAC=38,9;MLEAF=0.404,0.096;MQ=50.04;MQRankSum=-4.230e-01;QD=20.69;ReadPosRankSum=0.592;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.993;ANN=T|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.4101_4102delAA||||||,TA|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.4102delA|||||| GT:AD:DP:GQ:PL 1/1:0,14,0:14:42:395,42,0,395,42,395 0/0:9,0,0:9:15:0,15,225,15,225,225 1/1:0,7,0:7:21:198,21,0,198,21,198 0/1:2,7,0:9:29:170,0,29,176,50,227 1/2:1,3,4:8:48:187,85,91,48,0,72 0/0:4,0,0:4:12:0,12,155,12,155,155 2/2:0,0,5:5:15:192,192,192,15,15,0 0/1:3,10,0:13:45:243,0,45,252,75,327 0/0:18,0,0:18:12:0,12,596,12,596,596 0/1:3,13,0:16:18:320,0,18,328,57,386 0/0:4,0,0:4:9:0,9,135,9,135,135 ./.:0,0,0:0:.:. 0/0:5,0,0:5:0:0,0,125,0,125,125 2/2:0,0,6:6:18:232,232,232,18,18,0 0/1:13,6,0:19:99:112,0,308,151,326,478 1/1:0,3,0:3:9:135,9,0,135,9,135 2/2:0,0,4:4:12:154,154,154,12,12,0 0/0:1,0,0:1:3:0,3,30,3,30,30 ./.:0,0,0:0:.:. ./.:0,0,0:0:.:. ./.:0,0,0:0:.:. ./.:0,0,0:0:.:. ./.:0,0,0:0:.:. 0/0:5,0,0:5:15:0,15,197,15,197,197 0/0:7,0,0:7:15:0,15,225,15,225,225 0/0:4,0,0:4:12:0,12,121,12,121,121 ./.:0,0,0:0:.:. ./.:0,0,0:0:.:. 1/1:0,7,0:7:21:198,21,0,198,21,198 ./.:0,0,0:0:.:.
Chr1 4221 Chr1__4221 AT A 1235.1 PASS AC=13;AF=0.151;AN=86;BaseQRankSum=0.466;ClippingRankSum=0.825;DP=337;ExcessHet=0.0135;FS=0.000;InbreedingCoeff=0.3382;MLEAC=14;MLEAF=0.163;MQ=48.14;MQRankSum=-2.637e+00;QD=16.25;ReadPosRankSum=1.35;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.617;ANN=A|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.4222delT|||||| GT:AD:DP:GQ:PL 0/0:11,0:11:17:0,17,291 0/0:6,0:6:6:0,6,90 0/0:4,0:4:12:0,12,155 0/0:6,0:6:9:0,9,135 ./.:2,0:2:.:. 0/0:5,0:5:12:0,12,180 1/1:0,5:5:15:172,15,0 0/0:15,0:15:30:0,30,450 0/0:11,0:11:18:0,18,270 0/0:13,0:13:33:0,33,495 0/0:9,0:9:24:0,24,360 ./.:0,0:0:.:. 0/0:6,0:6:9:0,9,135 1/1:0,7:7:21:225,21,0 0/0:17,0:17:30:0,30,450 0/0:4,0:4:12:0,12,143 1/1:0,4:4:12:138,12,0 0/0:2,0:2:6:0,6,40 ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. 0/0:8,0:8:12:0,12,180 0/0:5,0:5:9:0,9,135 0/0:4,0:4:12:0,12,155 ./.:0,0:0:.:. ./.:0,0:0:.:. 0/0:11,0:11:18:0,18,270 ./.:0,0:0:.:.
Chr1 4454 Chr1__4454 C CAAAAAAAAAAAAT,CAAAAAAAAAAAAAT,CAAAAAAAATTTT 1952.88 PASS AC=9,1,2;AF=0.092,0.010,0.020;AN=98;BaseQRankSum=0.591;ClippingRankSum=0.955;DP=502;ExcessHet=2.6589;FS=0.000;InbreedingCoeff=0.0815;MLEAC=9,1,1;MLEAF=0.092,0.010,0.010;MQ=44.73;MQRankSum=-1.741e+00;QD=15.50;ReadPosRankSum=0.348;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.676;ANN=CAAAAAAAAAAAAAT|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.4454_4455insAAAAAAAAAAAAAT||||||,CAAAAAAAAAAAAT|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.4454_4455insAAAAAAAAAAAAT||||||,CAAAAAAAATTTT|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.4454_4455insAAAAAAAATTTT|||||| GT:AD:DP:GQ:PGT:PID:PL 0/0:11,0,0,0:11:27:.:.:0,27,405,27,405,405,27,405,405,405 0/1:7,4,0,0:11:99:.:.:147,0,311,168,323,491,168,323,491,491 0/0:5,0,0,0:5:9:.:.:0,9,135,9,135,135,9,135,135,135 0/1:15,6,0,0:21:99:.:.:184,0,637,230,655,885,230,655,885,885 0/0:12,0,0,0:12:21:.:.:0,21,315,21,315,315,21,315,315,315 0/0:2,0,0,0:2:6:.:.:0,6,84,6,84,84,6,84,84,84 0/0:8,0,0,0:8:0:.:.:0,0,82,0,82,82,0,82,82,82 0/0:16,0,0,0:16:36:.:.:0,36,540,36,540,540,36,540,540,540 0/0:15,0,0,0:15:3:.:.:0,3,390,3,390,390,3,390,390,390 0/0:9,0,0,0:9:21:.:.:0,21,315,21,315,315,21,315,315,315 0/0:12,0,0,0:12:0:.:.:0,0,345,0,345,345,0,345,345,345 ./.:2,0,0,0:2:.:.:.:. 0/1:3,2,0,0:5:75:.:.:75,0,154,84,160,244,84,160,244,244 0/0:4,0,0,0:4:6:.:.:0,6,90,6,90,90,6,90,90,90 0/1:13,5,0,0:18:99:.:.:171,0,818,210,833,1043,210,833,1043,1043 0/1:4,5,2,0:11:64:.:.:272,0,144,64,113,208,116,159,214,260 0/0:5,0,0,0:5:15:0|1:4453_G_C:0,15,225,15,225,225,15,225,225,225 ./.:4,0,0,0:4:.:.:.:. ./.:0,0,0,0:3:.:.:.:. ./.:1,0,0,0:1:.:.:.:. ./.:5,0,0,0:5:.:.:.:. ./.:5,0,0,0:5:.:.:.:. ./.:0,0,0,0:0:.:.:.:. 0/0:3,0,0,0:3:3:.:.:0,3,45,3,45,45,3,45,45,45 0/0:5,0,0,0:5:12:.:.:0,12,180,12,180,180,12,180,180,180 0/0:5,0,0,0:5:15:.:.:0,15,416,15,416,416,15,416,416,416 ./.:0,0,0,0:0:.:.:.:. ./.:9,0,0,0:9:.:.:.:. 0/0:6,0,0,0:8:18:.:.:0,18,270,18,270,270,18,270,270,270 ./.:0,0,0,0:2:.:.:.:.
Chr1 4534 Chr1__4534 AT A 3530.3 PASS AC=34;AF=0.288;AN=118;BaseQRankSum=0.406;ClippingRankSum=0.00;DP=525;ExcessHet=1.0010;FS=8.888;InbreedingCoeff=-0.0172;MLEAC=34;MLEAF=0.288;MQ=41.21;MQRankSum=0.736;QD=17.83;ReadPosRankSum=0.386;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=1.215;ANN=A|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.4535delT|||||| GT:AD:DP:GQ:PGT:PID:PL 1/1:1,12:13:10:.:.:406,10,0 0/0:11,1:12:6:.:.:0,6,289 0/0:8,0:8:0:.:.:0,0,81 0/1:8,8:16:99:.:.:192,0,175 0/1:6,3:9:63:.:.:63,0,147 0/0:7,0:7:9:.:.:0,9,135 0/1:1,5:6:11:.:.:132,0,11 0/1:5,6:11:99:.:.:147,0,112 0/0:21,0:21:21:.:.:0,21,631 1/1:0,10:10:30:.:.:289,30,0 0/0:14,0:14:15:.:.:0,15,225 ./.:2,0:2:.:.:.:. 0/0:9,0:9:0:.:.:0,0,246 1/1:0,2:2:6:.:.:60,6,0 0/0:10,0:10:0:.:.:0,0,239 0/1:3,2:5:45:.:.:45,0,72 0/1:1,2:3:20:.:.:51,0,20 0/1:1,2:3:36:0|1:4534_AT_A:81,0,36 ./.:5,0:5:.:.:.:. ./.:3,0:3:.:.:.:. 0/0:3,0:3:9:.:.:0,9,88 ./.:3,0:3:.:.:.:. ./.:0,0:0:.:.:.:. 0/0:3,0:3:6:.:.:0,6,90 0/0:7,0:7:0:.:.:0,0,56 0/0:10,0:10:0:.:.:0,0,227 ./.:0,0:0:.:.:.:. 0/0:4,0:4:12:.:.:0,12,116 0/1:1,4:5:14:.:.:105,0,14 ./.:1,0:1:.:.:.:.
Chr1 5410 Chr1__5410 A AG 243.24 PASS AC=4;AF=0.027;AN=148;BaseQRankSum=1.91;ClippingRankSum=2.44;DP=632;ExcessHet=0.0895;FS=3.528;InbreedingCoeff=0.0696;MLEAC=4;MLEAF=0.027;MQ=43.61;MQRankSum=-1.376e+00;QD=6.40;ReadPosRankSum=1.06;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=1.639;ANN=AG|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.5410_5411insG|||||| GT:AD:DP:GQ:PL 0/1:10,3:13:79:79,0,330 0/0:13,0:13:21:0,21,315 0/0:23,0:23:39:0,39,585 0/0:11,0:11:12:0,12,180 0/0:8,0:8:12:0,12,180 0/0:9,0:9:15:0,15,225 0/0:11,0:11:18:0,18,270 0/1:17,3:20:58:58,0,569 0/0:25,0:25:60:0,60,900 0/0:26,0:26:45:0,45,675 0/0:9,0:9:18:0,18,270 ./.:0,0:0:.:. 0/0:6,0:6:12:0,12,180 0/0:10,0:10:9:0,9,135 0/0:20,0:20:39:0,39,585 0/0:8,0:8:9:0,9,135 0/0:1,0:1:3:0,3,42 0/0:5,0:5:6:0,6,90 ./.:0,0:0:.:. 0/0:3,0:3:6:0,6,90 0/0:2,0:2:3:0,3,45 0/0:2,0:2:6:0,6,84 ./.:0,0:0:.:. 0/0:11,0:11:18:0,18,270 0/0:15,0:15:18:0,18,270 0/0:6,0:6:12:0,12,180 0/0:2,0:2:6:0,6,84 ./.:0,0:0:.:. 1/1:0,5:5:15:196,15,0 ./.:0,0:0:.:.
Chr1 6197 Chr1__6197 AT A 646.62 PASS AC=12;AF=0.128;AN=94;BaseQRankSum=0.678;ClippingRankSum=0.566;DP=336;ExcessHet=0.0000;FS=9.495;InbreedingCoeff=0.4971;MLEAC=9;MLEAF=0.096;MQ=44.62;MQRankSum=-8.960e-01;QD=15.77;ReadPosRankSum=-3.820e-01;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=1.967;ANN=A|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.6198delT|||||| GT:AD:DP:GQ:PL 0/0:16,0:16:39:0,39,585 0/0:7,0:7:15:0,15,225 1/1:0,4:4:12:122,12,0 0/0:9,0:9:18:0,18,270 0/1:7,4:11:89:89,0,180 0/0:6,0:6:18:0,18,239 0/0:8,0:8:21:0,21,315 0/0:17,0:17:36:0,36,540 0/0:15,0:15:3:0,3,519 1/1:0,6:6:18:183,18,0 0/0:6,0:6:15:0,15,225 ./.:0,0:0:.:. 0/0:2,0:2:6:0,6,84 0/0:6,0:6:12:0,12,180 0/0:11,0:11:24:0,24,360 0/0:5,0:5:12:0,12,180 0/0:8,0:8:18:0,18,270 0/0:6,0:6:12:0,12,180 ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. 0/0:5,0:5:15:0,15,209 0/0:1,0:1:3:0,3,15 ./.:4,0:4:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. ./.:0,0:0:.:. 0/0:1,0:1:3:0,3,42
Chr1 6530 Chr1__6530 GT G 274.81 PASS AC=5;AF=0.033;AN=152;BaseQRankSum=0.751;ClippingRankSum=0.337;DP=593;ExcessHet=3.4491;FS=8.112;InbreedingCoeff=-0.0890;MLEAC=4;MLEAF=0.026;MQ=52.37;MQRankSum=0.322;QD=4.29;ReadPosRankSum=0.851;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.625;ANN=G|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.6531delT|||||| GT:AD:DP:GQ:PGT:PID:PL 0/0:17,0:17:33:.:.:0,33,495 0/0:10,0:10:21:.:.:0,21,315 0/0:12,0:12:12:.:.:0,12,180 0/0:25,0:25:42:.:.:0,42,630 0/0:17,0:17:9:.:.:0,9,554 0/0:12,0:12:24:.:.:0,24,360 0/1:12,4:16:99:0|1:6524_C_A:132,0,492 0/0:14,0:14:36:.:.:0,36,540 0/0:18,0:18:51:.:.:0,51,765 0/0:13,0:13:30:.:.:0,30,450 0/0:8,0:8:21:.:.:0,21,315 0/0:5,0:5:12:.:.:0,12,180 0/0:6,0:6:15:.:.:0,15,225 0/0:9,0:9:0:.:.:0,0,258 0/0:13,0:13:36:.:.:0,36,540 0/0:8,0:8:21:.:.:0,21,315 0/1:8,1:9:12:0|1:6524_C_A:12,0,376 0/0:14,0:14:27:.:.:0,27,405 0/0:7,0:7:18:.:.:0,18,270 0/0:1,0:1:3:.:.:0,3,42 0/0:6,0:6:15:.:.:0,15,225 ./.:5,0:5:.:.:.:. 0/0:1,0:1:3:.:.:0,3,42 0/0:10,0:10:21:.:.:0,21,315 0/0:12,0:12:30:.:.:0,30,450 0/0:23,0:23:54:.:.:0,54,810 0/0:3,0:3:9:.:.:0,9,125 0/0:3,0:3:6:.:.:0,6,90 0/0:9,0:9:21:.:.:0,21,315 ./.:0,0:0:.:.:.:.
Chr1 8901 Chr1__8901 CAG C 247.26 PASS AC=6;AF=0.038;AN=160;BaseQRankSum=0.118;ClippingRankSum=0.00;DP=1046;ExcessHet=4.0428;FS=8.326;InbreedingCoeff=-0.0721;MLEAC=6;MLEAF=0.038;MQ=42.53;MQRankSum=-1.917e+00;QD=2.75;ReadPosRankSum=0.354;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=1.332;ANN=C|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.8902_8903delAG|||||| GT:AD:DP:GQ:PGT:PID:PL 0/1:7,1:8:18:0|1:8901_CAG_C:18,0,305 0/0:17,0:17:36:.:.:0,36,540 0/1:23,2:25:15:.:.:15,0,960 0/0:33,0:33:72:.:.:0,72,1080 0/0:12,0:15:35:.:.:0,35,403 0/0:11,0:11:18:.:.:0,18,270 0/0:12,0:12:20:.:.:0,20,328 0/0:39,0:39:87:.:.:0,87,1305 0/0:17,0:17:35:.:.:0,35,541 0/1:9,2:11:57:.:.:57,0,364 0/0:11,0:11:27:.:.:0,27,405 0/0:4,0:4:6:.:.:0,6,90 0/0:7,0:7:18:.:.:0,18,270 0/0:23,0:23:51:.:.:0,51,765 0/0:17,0:17:36:.:.:0,36,540 0/0:22,0:22:48:.:.:0,48,720 0/0:15,0:15:33:.:.:0,33,495 0/0:9,0:9:18:.:.:0,18,270 0/0:13,0:13:27:.:.:0,27,405 0/0:4,0:4:0:.:.:0,0,110 0/0:9,0:9:12:.:.:0,12,180 0/0:15,0:15:29:.:.:0,29,412 0/0:3,0:3:3:.:.:0,3,45 0/0:22,0:22:51:.:.:0,51,765 0/0:14,0:14:30:.:.:0,30,450 0/0:12,0:14:36:.:.:0,36,419 0/0:5,0:5:0:.:.:0,0,91 0/0:14,0:14:30:.:.:0,30,450 0/0:13,0:13:23:.:.:0,23,340 0/0:14,0:14:33:.:.:0,33,495
Chr1 8960 Chr1__8960 T TG 2833.68 PASS AC=26;AF=0.167;AN=156;BaseQRankSum=0.480;ClippingRankSum=-2.960e-01;DP=1085;ExcessHet=3.2526;FS=3.775;InbreedingCoeff=-0.0035;MLEAC=27;MLEAF=0.173;MQ=42.20;MQRankSum=-7.270e-01;QD=10.77;ReadPosRankSum=0.727;SNPEFF_EFFECT=INTERGENIC;SNPEFF_IMPACT=MODIFIER;SNPEFF_FUNCTIONAL_CLASS=NONE;SOR=0.942;ANN=TG|intergenic_region|MODIFIER|CHR_START-CSS0005497|CHR_START-CSS0005497|intergenic_region|CHR_START-CSS0005497|||n.8960_8961insG|||||| GT:AD:DP:GQ:PGT:PID:PL 0/0:7,0:7:12:.:.:0,12,180 0/0:16,0:16:36:.:.:0,36,540 0/0:28,0:28:57:.:.:0,57,855 0/0:31,0:31:57:.:.:0,57,855 0/0:22,0:22:36:.:.:0,36,540 0/1:8,2:10:37:.:.:37,0,243 0/0:11,0:11:21:.:.:0,21,315 0/0:39,0:39:69:.:.:0,69,1035 0/0:14,0:14:0:.:.:0,0,455 0/0:15,0:15:21:.:.:0,21,315 0/0:9,0:9:27:.:.:0,27,308 1/1:0,3:3:9:.:.:100,9,0 0/0:11,0:11:21:.:.:0,21,315 0/0:27,0:27:48:.:.:0,48,720 0/0:16,0:16:24:.:.:0,24,360 0/0:19,0:19:42:.:.:0,42,630 0/0:14,0:14:36:.:.:0,36,540 0/1:3,8:11:69:.:.:232,0,69 0/1:5,7:12:99:.:.:198,0,135 1/1:0,6:6:18:.:.:200,18,0 0/1:3,4:7:87:.:.:92,0,87 0/1:6,7:13:99:.:.:186,0,158 0/0:3,0:3:0:.:.:0,0,42 0/1:11,6:17:99:.:.:127,0,325 0/1:8,2:10:37:.:.:37,0,243 0/1:6,7:13:99:.:.:190,0,188 0/1:1,3:4:22:0|1:8942_GTTGTT_G:99,0,22 1/1:0,10:10:30:.:.:333,30,0 0/0:13,0:13:12:.:.:0,12,180 0/1:5,11:16:99:.:.:312,0,155