UndefVarError: DataFrame not defined Stacktrace

kuaile6666 · 2022 年6 月 19 日 05:41

不是所有这些代码吧

实在抱歉，我不知道怎么调用控制台

kuaile6666 · 2022 年6 月 19 日 05:43

也不知这吧

Rratic · 2022 年6 月 19 日 05:44

所以你那个环境是jupyter还是pluto notebook啥
REPL : cmd里输入julia

MARK: README里写了docker pull razaa/mpnn_charge_prediction_image:version1

kuaile6666 · 2022 年6 月 19 日 05:52

（1）我在Visual Studio Code运行的，我看是Jupyter Kerner,应该是jupyter

（2）您说的REPL : cmd里输入julia，我这样弄了弄，似乎还是不对

Rratic · 2022 年6 月 19 日 05:54

不能理解你在干什么

Microsoft Windows [版本 10.0.19044.1766]
(c) Microsoft Corporation。保留所有权利。

C:\Users\rratic>julia
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.6.1 (2021-04-23)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> using xxx

kuaile6666 · 2022 年6 月 19 日 05:59

能否把REPL上所有东西都复制下？
不要放图，用代码块

```jl
julia> 1+1

我在弄您一开始说的，我不知道怎么弄
![image|690x382](upload://2taOweJ9m3b9XXsvBoPPeb7yj9u.png)

Rratic · 2022 年6 月 19 日 06:04

？？？
windows是吧，按windows+R，输入julia
然后依次写入你之前的代码
然后复制，保留显示的所有信息

```jl
黏贴到这里
```

kuaile6666 · 2022 年6 月 19 日 06:09

Microsoft Windows [版本 10.0.19044.1706]
(c) Microsoft Corporation。保留所有权利。

C:\Users\zzh666>julia
_
_ _ ()_ | Documentation: https://docs.julialang.org
() | () () |
_ _ | | __ _ | Type “?” for help, “]?” for Pkg help.
| | | | | | |/ ` | |
| | || | | | (| | | Version 1.6.6 (2022-03-28)
/ |_‘|||_’_| | Official https://julialang.org/ release
|__/ |

julia> using PorousMaterials # use major_refactor branch.
┌ Warning: crystals path directory not found
│ path = “C:\Users\zzh666\data\crystals”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: data path directory not found
│ path = “C:\Users\zzh666\data”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: forcefields path directory not found
│ path = “C:\Users\zzh666\data\forcefields”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: grids path directory not found
│ path = “C:\Users\zzh666\data\grids”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: molecules path directory not found
│ path = “C:\Users\zzh666\data\molecules”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: crystals path directory not found
│ path = “C:\Users\zzh666\data\crystals”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: data path directory not found
│ path = “C:\Users\zzh666\data”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: simulations path directory not found
│ path = “C:\Users\zzh666\data\simulations”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186

julia> using Base
julia> using DataFrames
julia> using PyPlot
julia> using NPZ
julia> using CSV
julia> using LightGraphs
julia> using LinearAlgebra
julia> using Logging
julia> using Printf
julia> using DelimitedFiles
julia> using ProgressMeter
julia> using PyCall
julia> push!(LOAD_PATH, pwd()) # to see Bonds.jl
4-element Vector{String}:
“@”
“@v#.#”
“@stdlib”
“C:\Users\zzh666”

julia> using Bonds
ERROR: ArgumentError: Package Bonds not found in current path:

Run import Pkg; Pkg.add("Bonds") to install the Bonds package.

Stacktrace:
[1] require(into::Module, mod::Symbol)
@ Base .\loading.jl:893

julia> using Statistics
julia> # global_logger(Logging.SimpleLogger(stdout, Logging.Info)) # to print @debug put Logging.Debug
julia> global_logger(Logging.SimpleLogger(stdout, Logging.Debug)) # to print @debug put Logging.Debug

这样吗

Rratic · 2022 年6 月 19 日 06:13

这个是warning哎，不影响运行

pwd是当前路径，写所在位置。

using PorousMaterials 这个Bonds会自己调用，不需要提前写

kuaile6666 · 2022 年6 月 19 日 06:28

（1）首先，我把Bonds。jl文件放在这个位置

（2）然后在pwd里添加路径

Rratic · 2022 年6 月 19 日 06:30

把pwd()去掉，直接用那个字符串

kuaile6666 · 2022 年6 月 19 日 06:30

太感谢您的耐心指导，我要认真学julia语言

kuaile6666 · 2022 年6 月 19 日 06:34

还是之前那两种报错

kuaile6666 · 2022 年6 月 19 日 06:36

Microsoft Windows [版本 10.0.19044.1706]
(c) Microsoft Corporation。保留所有权利。

C:\Users\zzh666>julia
_
_ _ ()_ | Documentation: https://docs.julialang.org
() | () () |
_ _ | | __ _ | Type “?” for help, “]?” for Pkg help.
| | | | | | |/ ` | |
| | || | | | (| | | Version 1.6.6 (2022-03-28)
/ |_‘|||_’_| | Official https://julialang.org/ release
|__/ |

julia> using Base

julia> using DataFrames

julia> using PyPlot

julia> using NPZ

julia> using CSV

julia> using LightGraphs

julia> using LinearAlgebra

julia> using Logging

julia> using Printf

julia> using DelimitedFiles

julia> using ProgressMeter

julia> using PyCall

julia> push!(LOAD_PATH, “D:/julia/Bonds.jl”) # to see Bonds.jl
4-element Vector{String}:
“@”
“@v#.#”
“@stdlib”
“D:/julia/Bonds.jl”

julia> using Bonds
ERROR: ArgumentError: Package Bonds not found in current path:

Run import Pkg; Pkg.add("Bonds") to install the Bonds package.

Stacktrace:
[1] require(into::Module, mod::Symbol)
@ Base .\loading.jl:893

julia> using Statistics

julia> using PorousMaterials
┌ Warning: crystals path directory not found
│ path = “C:\Users\zzh666\data\crystals”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: data path directory not found
│ path = “C:\Users\zzh666\data”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: forcefields path directory not found
│ path = “C:\Users\zzh666\data\forcefields”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: grids path directory not found
│ path = “C:\Users\zzh666\data\grids”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: molecules path directory not found
│ path = “C:\Users\zzh666\data\molecules”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: crystals path directory not found
│ path = “C:\Users\zzh666\data\crystals”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: data path directory not found
│ path = “C:\Users\zzh666\data”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: simulations path directory not found
│ path = “C:\Users\zzh666\data\simulations”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186

julia> # global_logger(Logging.SimpleLogger(stdout, Logging.Info)) # to print @debug put Logging.Debug

julia> global_logger(Logging.SimpleLogger(stdout, Logging.Debug)) # to print @debug put Logging.Debug

Rratic · 2022 年6 月 19 日 06:37

这里第一个似乎是warning，第二个是error没截全（请截关键部分，应该是以caused by开头的）

也不需要之后再写

kuaile6666 · 2022 年6 月 19 日 06:43

关于第二个错误：
（1）在VS code里

（2）在cmd里

Rratic · 2022 年6 月 19 日 06:47

改成push!(LOAD_PATH, "D:/julia")

kuaile6666 · 2022 年6 月 19 日 07:02

改了

在cmd里的报错是这样的
julia> using Bonds
[ Info: Precompiling Bonds [top-level]
┌ Warning: crystals path directory not found
│ path = “C:\Users\zzh666\data\crystals”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: data path directory not found
│ path = “C:\Users\zzh666\data”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: forcefields path directory not found
│ path = “C:\Users\zzh666\data\forcefields”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: grids path directory not found
│ path = “C:\Users\zzh666\data\grids”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: molecules path directory not found
│ path = “C:\Users\zzh666\data\molecules”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: crystals path directory not found
│ path = “C:\Users\zzh666\data\crystals”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: data path directory not found
│ path = “C:\Users\zzh666\data”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: simulations path directory not found
│ path = “C:\Users\zzh666\data\simulations”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
ERROR: LoadError: ArgumentError: provide a valid sink argument, like using DataFrames; CSV.read(source, DataFrame)
Stacktrace:
[1] read(source::String, sink::Nothing; copycols::Bool, kwargs::Base.Iterators.Pairs{Symbol, String, Tuple{Symbol}, NamedTuple{(:comment,), Tuple{String}}})
@ CSV C:\Users\zzh666.julia\packages\CSV\Zl2ww\src\CSV.jl:43
[2] cordero_covalent_atomic_radii()
@ Bonds D:\julia\Bonds.jl:14
[3] top-level scope
@ D:\julia\Bonds.jl:34
[4] include
@ .\Base.jl:384 [inlined]
[5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base .\loading.jl:1235
[6] top-level scope
@ none:1
[7] eval
@ .\boot.jl:360 [inlined]
[8] eval(x::Expr)
@ Base.MainInclude .\client.jl:446
[9] top-level scope
@ none:1
in expression starting at D:\julia\Bonds.jl:1
ERROR: Failed to precompile Bonds [top-level] to C:\Users\zzh666.julia\compiled\v1.6\jl_C1C8.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY, ignore_loaded_modules::Bool)
@ Base .\loading.jl:1385
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base .\loading.jl:1329
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1043
[5] require(uuidkey::Base.PkgId)
@ Base .\loading.jl:936
[6] require(into::Module, mod::Symbol)
@ Base .\loading.jl:923

Rratic · 2022 年6 月 19 日 07:07

~~现在你有充足的理由*开发者了~~

把Bonds.jl第14行改成CSV.read("covalent_radii.csv", DataFrame; comment="#")

还有就是把using Base去掉，没用

kuaile6666 · 2022 年6 月 19 日 07:18

把14行改了

说是DataFrame没有定义

julia> push!(LOAD_PATH,“D:/julia”)
4-element Vector{String}:
“@”
“@v#.#”
“@stdlib”
“D:/julia”

julia> using Bonds
[ Info: Precompiling Bonds [top-level]
┌ Warning: crystals path directory not found
│ path = “C:\Users\zzh666\data\crystals”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: data path directory not found
│ path = “C:\Users\zzh666\data”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: forcefields path directory not found
│ path = “C:\Users\zzh666\data\forcefields”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: grids path directory not found
│ path = “C:\Users\zzh666\data\grids”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: molecules path directory not found
│ path = “C:\Users\zzh666\data\molecules”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: crystals path directory not found
│ path = “C:\Users\zzh666\data\crystals”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: data path directory not found
│ path = “C:\Users\zzh666\data”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
┌ Warning: simulations path directory not found
│ path = “C:\Users\zzh666\data\simulations”
└ @ Xtals C:\Users\zzh666.julia\packages\Xtals\vIP0H\src\misc.jl:186
ERROR: LoadError: UndefVarError: DataFrame not defined
Stacktrace:
[1] cordero_covalent_atomic_radii()
@ Bonds D:\julia\Bonds.jl:14
[2] top-level scope
@ D:\julia\Bonds.jl:34
[3] include
@ .\Base.jl:384 [inlined]
[4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base .\loading.jl:1235
[5] top-level scope
@ none:1
[6] eval
@ .\boot.jl:360 [inlined]
[7] eval(x::Expr)
@ Base.MainInclude .\client.jl:446
[8] top-level scope
@ none:1
in expression starting at D:\julia\Bonds.jl:1
ERROR: Failed to precompile Bonds [top-level] to C:\Users\zzh666.julia\compiled\v1.6\jl_6444.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY, ignore_loaded_modules::Bool)
@ Base .\loading.jl:1385
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base .\loading.jl:1329
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1043
[5] require(uuidkey::Base.PkgId)
@ Base .\loading.jl:936
[6] require(into::Module, mod::Symbol)
@ Base .\loading.jl:923